You are reading a lot into the text that is not found anywhere in the text.
In Hebrews 11:3, it says that the ages have been framed by the ῥῆμα rhēma of God.
Since the English word used by the translators for ῥῆμα rhēma is the same English word used by the translators for λόγος logos in John 1:1, you made the mistake of thinking they were the same thing.
Actually you are not reading the text at all.
The Book of Hebrews is aptly named for the OT material of which it contains.
Thus...the examples contained within its pages are from the Hebrew OT...NOT the Greek NT.
Think, Mcfly....
Secondly, the exact term and associated phraseology is already located in Heb 1.2 - 3, and pertains DIRECTLY to The Son.
Thirdly, Heb 1.1 immediately informs the reader that the One God of the OT has always revealed Himself ‘by many portions’ (polymeros) and ‘in various forms’ (polytropos).
These two Greek terms are only used this one time/ea in the entirety of the Holy Bible, and lexically are defined as
‘One of the constituent parts of a whole; in a context where the whole and its parts are distinguished.’
A clear signal of the ONE Triune Creator God of the Universe.
So...this faith example is smack-dab in the heart of The Trinity.
Also, there is no mention of the Spirit in either Hebrews 11:3 or in John 1:1, so you have no grounds for your insistence that the text says something that is not actually in any of the words of the text.
Again...
Heb 1.1 - 3, where the same phrase is repeated, already calls-out for Father & Son.
Further the OT Hebrew example is from Genesis 1 as I already mentioned, but you completely ignored - of which directly mentions The Spirit!
Thus...we have Father, Son & Spirit declared in the very FIRST faith example.
You are pegging a 10 on the scriptural ignorance scale.